Package: PSSMCOOL
Type: Package
Title: Features Extracted from Position Specific Scoring Matrix (PSSM)
Version: 0.2.2
Imports: utils, gtools, infotheo, phonTools, dtt
Authors@R: c(
    person("Javad", "zahiri", email = "zahiri@modares.ac.ir", role = "aut"),
    person("Alireza", "mohammadi", email = "alireza691111@gmail.com", role = c("aut","cre")))
Maintainer: Alireza mohammadi <alireza691111@gmail.com>
Depends: R (>= 3.1.0)
Description: Returns almost all features that has been extracted from
        Position Specific Scoring Matrix (PSSM) so far, which is a
        matrix of L rows (L is protein length) and 20 columns produced
        by 'PSI-BLAST' which is a program to produce PSSM Matrix from
        multiple sequence alignment of proteins see
        <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details.
        some of these features are described in Zahiri, J., et
        al.(2013) <DOI:10.1016/j.ygeno.2013.05.006>, Saini, H., et
        al.(2016) <DOI:10.17706/jsw.11.8.756-767>, Ding, S., et
        al.(2014) <DOI:10.1016/j.biochi.2013.09.013>, Cheng, C.W., et
        al.(2008) <DOI:10.1186/1471-2105-9-S12-S6>, Juan, E.Y., et
        al.(2009) <DOI:10.1109/CISIS.2009.194>.
License: GPL-3
URL: https://github.com/Alireza9651501005/PSSMCOOL
BugReports: https://github.com/Alireza9651501005/PSSMCOOL/issues
Encoding: UTF-8
RoxygenNote: 7.1.1
Suggests: testthat, spelling, waveslim, knitr, rmarkdown
Language: en-US
VignetteBuilder: knitr
Repository: https://biocool-lab.r-universe.dev
Date/Publication: 2021-12-30 09:03:10 UTC
RemoteUrl: https://github.com/biocool-lab/pssmcool
RemoteRef: HEAD
RemoteSha: 65e1c4e91cfdda6a7d0c715ded9910f50bf3a390
NeedsCompilation: no
Packaged: 2026-10-08 09:56:27 UTC; root
Author: Javad zahiri [aut],
  Alireza mohammadi [aut, cre]