Package: PSSMCOOL 0.2.2
PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)
Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are described in Zahiri, J., et al.(2013) <doi:10.1016/j.ygeno.2013.05.006>, Saini, H., et al.(2016) <doi:10.17706/jsw.11.8.756-767>, Ding, S., et al.(2014) <doi:10.1016/j.biochi.2013.09.013>, Cheng, C.W., et al.(2008) <doi:10.1186/1471-2105-9-S12-S6>, Juan, E.Y., et al.(2009) <doi:10.1109/CISIS.2009.194>.
Authors:
PSSMCOOL_0.2.2.tar.gz
PSSMCOOL_0.2.2.zip(r-4.5)PSSMCOOL_0.2.2.zip(r-4.4)PSSMCOOL_0.2.2.zip(r-4.3)
PSSMCOOL_0.2.2.tgz(r-4.4-any)PSSMCOOL_0.2.2.tgz(r-4.3-any)
PSSMCOOL_0.2.2.tar.gz(r-4.5-noble)PSSMCOOL_0.2.2.tar.gz(r-4.4-noble)
PSSMCOOL_0.2.2.tgz(r-4.4-emscripten)PSSMCOOL_0.2.2.tgz(r-4.3-emscripten)
PSSMCOOL.pdf |PSSMCOOL.html✨
PSSMCOOL/json (API)
# Install 'PSSMCOOL' in R: |
install.packages('PSSMCOOL', repos = c('https://biocool-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alireza9651501005/pssmcool/issues
Last updated 3 years agofrom:65e1c4e91c. Checks:ERROR: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | FAIL | Oct 12 2024 |
R-4.5-win | WARNING | Oct 12 2024 |
R-4.5-linux | WARNING | Oct 12 2024 |
R-4.4-win | WARNING | Oct 12 2024 |
R-4.4-mac | WARNING | Oct 12 2024 |
R-4.3-win | WARNING | Oct 12 2024 |
R-4.3-mac | WARNING | Oct 12 2024 |
Exports:AATP_TPCCAB_PSSMAverag_Blockconsunsus_sequenceCS_PSe_PSSMDFMCA_PSSMDiscrete_Cosine_TransformdisulfidDP_PSSMDPC_PSSMdwt_PSSMEDP_MEDPFPSSMFPSSM2grey_pssm_pseAACk_mersk_seperated_bigramekiderafactorLPC_PSSMMBMGACPSSMpse_pssmpssm_acpssm_ccPSSM_SDpssm_segpssm400PSSMACPSSMBLOCKrpssmscsh2single_Averagesmoothed_PSSMSOMA_PSSMSVD_PSSMthree_mertrigrame_pssm