Package: PSSMCOOL 0.2.2

Alireza mohammadi

PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)

Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are described in Zahiri, J., et al.(2013) <doi:10.1016/j.ygeno.2013.05.006>, Saini, H., et al.(2016) <doi:10.17706/jsw.11.8.756-767>, Ding, S., et al.(2014) <doi:10.1016/j.biochi.2013.09.013>, Cheng, C.W., et al.(2008) <doi:10.1186/1471-2105-9-S12-S6>, Juan, E.Y., et al.(2009) <doi:10.1109/CISIS.2009.194>.

Authors:Javad zahiri [aut], Alireza mohammadi [aut, cre]

PSSMCOOL_0.2.2.tar.gz
PSSMCOOL_0.2.2.zip(r-4.5)PSSMCOOL_0.2.2.zip(r-4.4)PSSMCOOL_0.2.2.zip(r-4.3)
PSSMCOOL_0.2.2.tgz(r-4.4-any)PSSMCOOL_0.2.2.tgz(r-4.3-any)
PSSMCOOL_0.2.2.tar.gz(r-4.5-noble)PSSMCOOL_0.2.2.tar.gz(r-4.4-noble)
PSSMCOOL_0.2.2.tgz(r-4.4-emscripten)PSSMCOOL_0.2.2.tgz(r-4.3-emscripten)
PSSMCOOL.pdf |PSSMCOOL.html
PSSMCOOL/json (API)

# Install 'PSSMCOOL' in R:
install.packages('PSSMCOOL', repos = c('https://biocool-lab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/alireza9651501005/pssmcool/issues

On CRAN:

3.41 score 4 stars 13 scripts 244 downloads 36 exports 4 dependencies

Last updated 3 years agofrom:65e1c4e91c. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesFAILNov 11 2024
R-4.5-winWARNINGNov 11 2024
R-4.5-linuxWARNINGNov 11 2024
R-4.4-winWARNINGNov 11 2024
R-4.4-macWARNINGNov 11 2024
R-4.3-winWARNINGNov 11 2024
R-4.3-macWARNINGNov 11 2024

Exports:AATP_TPCCAB_PSSMAverag_Blockconsunsus_sequenceCS_PSe_PSSMDFMCA_PSSMDiscrete_Cosine_TransformdisulfidDP_PSSMDPC_PSSMdwt_PSSMEDP_MEDPFPSSMFPSSM2grey_pssm_pseAACk_mersk_seperated_bigramekiderafactorLPC_PSSMMBMGACPSSMpse_pssmpssm_acpssm_ccPSSM_SDpssm_segpssm400PSSMACPSSMBLOCKrpssmscsh2single_Averagesmoothed_PSSMSOMA_PSSMSVD_PSSMthree_mertrigrame_pssm

Dependencies:dttgtoolsinfotheophonTools